Rearranged Oriloc output example: Previous Index Next
Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.
Genome size (bp): 5751492
Number of genes 4540
Oriloc predictions: Origin 3 kb Terminus 3743 kb
Worning et al., 2006: Origin 5749 kb Terminus 3739 kb
Position(s) of the ORC/Cdc6 gene(s): 0.9 kb, 105.83 kb, 4363.58 kb, 5636.54 kb
Consensus predictions: Origin 3 kb Terminus 3743 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1730 | 0 | 4372 |
| GC-skew reverse | 2988 | 0.02667 | 1762 |
| AT-skew forward | 640 | 0.04333 | 1557 |
| 1461 | 0.03 | 3706 | |
| AT-skew reverse | 3133 | 0 | 2203 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1730 (4372.0815 kb) | leading | -0.014 |
| 1731 (4373.9145 kb) | 2272 (5751.247 kb) | lagging | -0.072 | |
| GC-skew reverse | 2273 (0 kb) | 2988 (1762.436 kb) | leading | 0.055 |
| 2989 (1763.53 kb) | 4540 (5751.247 kb) | NA | 0.02 | |
| AT-skew forward | 1 (0 kb) | 640 (1557.073 kb) | leading | -0.081 |
| 641 (1561.7505 kb) | 1461 (3705.7845 kb) | leading | -0.027 | |
| 1462 (3706.6385 kb) | 2272 (5751.247 kb) | lagging | 0.033 | |
| AT-skew reverse | 2273 (0 kb) | 3133 (2202.9005 kb) | leading | -0.048 |
| 3134 (2206.905 kb) | 4540 (5751.247 kb) | NA | 0.041 |
More G than C on the leading strand for replication - for forward encoded genes.