Rearranged Oriloc output example: Previous Index Next




Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces.
Genome size (bp): 8667507
Number of genes 7742
Oriloc predictions: Origin 4685 kb Terminus 373 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4239.649 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3604.8 kb, 4271.76 kb, 4331.34 kb, 4390.39 kb, 5815.73 kb
Consensus predictions: Origin 4270 kb Terminus 373 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward1425NA3421
2278NA5256
GC-skew reverse5677NA3606
AT-skew forward1182NA2744
2782NA6148
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)1425 (3421.0335 kb) lagging-0.074
1426 (3422.3025 kb)2278 (5255.508 kb) NA-0.14
2279 (5257.334 kb)3954 (8667.062 kb) leading-0.184
GC-skew reverse 3955 (0 kb)5677 (3606.1005 kb) lagging0.192
5678 (3606.542 kb)7742 (8667.062 kb) NA0.11
AT-skew forward 1 (0 kb)1182 (2743.5445 kb) NA-0.078
1183 (2748.2675 kb)2782 (6148.188 kb) NA-0.012
2783 (6152.5645 kb)3954 (8667.062 kb) leading0.135
More C than G on the leading strand for replication - for forward encoded genes.