Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.
Genome size (bp): 5373180
Number of genes 4909
Oriloc predictions: Origin 0 kb Terminus 2730 kb
Worning et al., 2006: Origin 5373 kb Terminus 2734 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 5367.814 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.76 kb
Consensus predictions: Origin 0 kb Terminus 2730 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1537 | 0 | 2815 |
| GC-skew reverse | 3594 | 0 | 2785 |
| AT-skew forward | 1410 | 0 | 2609 |
| AT-skew reverse | 3891 | 0 | 3343 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1537 (2814.6735 kb) | leading | 0.038 |
| 1538 (2819.677 kb) | 2522 (5373.071 kb) | lagging | -0.094 | |
| GC-skew reverse | 2523 (0 kb) | 3594 (2784.9875 kb) | leading | 0.085 |
| 3595 (2785.461 kb) | 4909 (5373.071 kb) | lagging | -0.041 | |
| AT-skew forward | 1 (0 kb) | 1410 (2609.07 kb) | leading | -0.116 |
| 1411 (2609.5945 kb) | 2522 (5373.071 kb) | lagging | -0.089 | |
| AT-skew reverse | 2523 (0 kb) | 3891 (3343.3525 kb) | NA | 0.084 |
| 3892 (3343.7985 kb) | 4909 (5373.071 kb) | lagging | 0.116 |
More G than C on the leading strand for replication.