Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Genome size (bp): 2799251
Number of genes 2373
Oriloc predictions: Origin 0 kb Terminus 1395 kb
Worning et al., 2006: Origin 52 kb Terminus 1396 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 52.839 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 51.74 kb
Consensus predictions: Origin 0 kb Terminus 1395 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 889 | NA | 1450 |
| GC-skew reverse | 1360 | NA | 1409 |
| AT-skew forward | 882 | NA | 1391 |
| AT-skew reverse | 1360 | NA | 1409 |
| 1533 | NA | 1677 | |
| 1740 | NA | 1916 | |
| 1833 | NA | 2074 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 889 (1450.2155 kb) | leading | 0.32 |
| 890 (1454.6505 kb) | 1087 (2788.261 kb) | lagging | -0.003 | |
| GC-skew reverse | 1088 (0 kb) | 1360 (1409.31 kb) | leading | 0.003 |
| 1361 (1411.6505 kb) | 2373 (2788.261 kb) | lagging | -0.291 | |
| AT-skew forward | 1 (0 kb) | 882 (1391.146 kb) | leading | 0.113 |
| 883 (1393.009 kb) | 1087 (2788.261 kb) | lagging | -0.045 | |
| AT-skew reverse | 1088 (0 kb) | 1360 (1409.31 kb) | leading | 0.037 |
| 1361 (1411.6505 kb) | 1533 (1677.3545 kb) | lagging | -0.058 | |
| 1534 (1678.284 kb) | 1740 (1916.3525 kb) | lagging | -0.129 | |
| 1741 (1917.0595 kb) | 1833 (2074.0985 kb) | lagging | -0.031 | |
| 1834 (2075.985 kb) | 2373 (2788.261 kb) | lagging | -0.126 |
More G than C on the leading strand for replication.