Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Silicibacter.
Genome size (bp): 4109442
Number of genes 3810
Oriloc predictions: Origin 0 kb Terminus 2129 kb
Worning et al., 2006: Origin 3893 kb Terminus 2089 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2549.983 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 165.03 kb
Consensus predictions: Origin 0 kb Terminus 2129 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1016 | NA | 2042 |
| GC-skew reverse | 2808 | NA | 2116 |
| AT-skew forward | 1149 | NA | 2349 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1016 (2042.345 kb) | leading | 0.014 |
| 1017 (2043.412 kb) | 1905 (4109.427 kb) | lagging | -0.07 | |
| GC-skew reverse | 1906 (0 kb) | 2808 (2116.2855 kb) | leading | 0.067 |
| 2809 (2116.9375 kb) | 3810 (4109.427 kb) | lagging | -0.003 | |
| AT-skew forward | 1 (0 kb) | 1149 (2349.0135 kb) | leading | -0.33 |
| 1150 (2351.4725 kb) | 1905 (4109.427 kb) | lagging | -0.266 |
More G than C on the leading strand for replication.