Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome size (bp): 5175554
Number of genes 4312
Oriloc predictions: Origin 5065 kb Terminus 2523 kb
Worning et al., 2006: Origin 0 kb Terminus 2493 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1760.988 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb
Consensus predictions: Origin 5065 kb Terminus 2523 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1179 | NA | 2491 |
| GC-skew reverse | 2440 | NA | 683 |
| 3072 | NA | 2411 | |
| AT-skew forward | 1027 | NA | 2113 |
| AT-skew reverse | 2358 | NA | 463 |
| 3150 | NA | 2653 | |
| 3558 | NA | 3496 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1179 (2490.75 kb) | leading | -0.007 |
| 1180 (2492.963 kb) | 2178 (5175.353 kb) | lagging | -0.081 | |
| GC-skew reverse | 2179 (0 kb) | 2440 (682.9765 kb) | leading | 0.046 |
| 2441 (684.7865 kb) | 3072 (2410.834 kb) | leading | 0.085 | |
| 3073 (2416.2205 kb) | 4312 (5175.353 kb) | lagging | -0.005 | |
| AT-skew forward | 1 (0 kb) | 1027 (2113.0395 kb) | leading | -0.225 |
| 1028 (2113.8735 kb) | 2178 (5175.353 kb) | NA | -0.122 | |
| AT-skew reverse | 2179 (0 kb) | 2358 (463.1465 kb) | leading | 0.14 |
| 2359 (465.201 kb) | 3150 (2653.491 kb) | leading | 0.113 | |
| 3151 (2664.427 kb) | 3558 (3495.8485 kb) | lagging | 0.224 | |
| 3559 (3499.919 kb) | 4312 (5175.353 kb) | lagging | 0.2 |
More G than C on the leading strand for replication.