Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome size (bp): 4941439
Number of genes 4080
Oriloc predictions: Origin 192 kb Terminus 2419 kb
Worning et al., 2006: Origin 4825 kb Terminus 2388 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2135.949 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb
Consensus predictions: Origin 192 kb Terminus 2419 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1074 | NA | 2458 |
| GC-skew reverse | 2502 | NA | 1399 |
| 2821 | NA | 2163 | |
| AT-skew forward | 1066 | NA | 2440 |
| AT-skew reverse | 2277 | NA | 783 |
| 2883 | NA | 2312 | |
| 3760 | NA | 4267 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1074 (2457.876 kb) | leading | 0.008 |
| 1075 (2458.9565 kb) | 1971 (4941.104 kb) | lagging | -0.042 | |
| GC-skew reverse | 1972 (0 kb) | 2502 (1399.197 kb) | leading | 0.039 |
| 2503 (1401.4805 kb) | 2821 (2163.4295 kb) | leading | 0.087 | |
| 2822 (2164.2885 kb) | 4080 (4941.104 kb) | lagging | -0.004 | |
| AT-skew forward | 1 (0 kb) | 1066 (2439.577 kb) | leading | -0.197 |
| 1067 (2445.0285 kb) | 1971 (4941.104 kb) | lagging | -0.094 | |
| AT-skew reverse | 1972 (0 kb) | 2277 (783.0285 kb) | NA | 0.1 |
| 2278 (784.1735 kb) | 2883 (2311.6555 kb) | leading | 0.118 | |
| 2884 (2314.359 kb) | 3760 (4266.7395 kb) | lagging | 0.211 | |
| 3761 (4267.3395 kb) | 4080 (4941.104 kb) | lagging | 0.166 |
More G than C on the leading strand for replication.