Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.
Genome size (bp): 4607203
Number of genes 4182
Oriloc predictions: Origin 3820 kb Terminus 1619 kb
Worning et al., 2006: Origin 3814 kb Terminus 1563 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2011.079 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3869.71 kb
Consensus predictions: Origin 3820 kb Terminus 1619 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 809 | NA | 1626 |
| 1503 | NA | 3366 | |
| GC-skew reverse | 2849 | NA | 1820 |
| 3181 | NA | 2435 | |
| AT-skew forward | 868 | NA | 1767 |
| 1596 | NA | 3608 | |
| AT-skew reverse | 3009 | NA | 2107 |
| 3857 | NA | 3795 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 809 (1625.642 kb) | leading | 0.082 |
| 810 (1630.4005 kb) | 1503 (3366.085 kb) | lagging | -0.003 | |
| 1504 (3368.5165 kb) | 2059 (4607.176 kb) | NA | 0.038 | |
| GC-skew reverse | 2060 (0 kb) | 2849 (1819.695 kb) | leading | -0.016 |
| 2850 (1820.8555 kb) | 3181 (2435.006 kb) | lagging | -0.105 | |
| 3182 (2435.931 kb) | 4182 (4607.176 kb) | NA | -0.057 | |
| AT-skew forward | 1 (0 kb) | 868 (1766.6965 kb) | leading | -0.167 |
| 869 (1769.0685 kb) | 1596 (3608.3975 kb) | lagging | -0.148 | |
| 1597 (3610.3015 kb) | 2059 (4607.176 kb) | NA | -0.189 | |
| AT-skew reverse | 2060 (0 kb) | 3009 (2107.4545 kb) | NA | 0.156 |
| 3010 (2108.74 kb) | 3857 (3795.098 kb) | lagging | 0.205 | |
| 3858 (3801.181 kb) | 4182 (4607.176 kb) | leading | 0.163 |