Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.
Genome size (bp): 4599354
Number of genes 4067
Oriloc predictions: Origin 3953 kb Terminus 1659 kb
Worning et al., 2006: Origin 3980 kb Terminus 1601 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1987.731 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 2584.77 kb, 3904.86 kb
Consensus predictions: Origin 3953 kb Terminus 1659 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 831 | NA | 1686 |
| 1499 | NA | 3422 | |
| GC-skew reverse | 2694 | NA | 1612 |
| 3516 | NA | 3296 | |
| AT-skew forward | 1106 | NA | 2493 |
| 1711 | NA | 4002 | |
| AT-skew reverse | 2931 | NA | 2090 |
| 3835 | NA | 3985 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 831 (1686.0965 kb) | leading | 0.078 |
| 832 (1687.621 kb) | 1499 (3421.966 kb) | lagging | -0.003 | |
| 1500 (3425.6975 kb) | 2028 (4599.327 kb) | NA | 0.044 | |
| GC-skew reverse | 2029 (0 kb) | 2694 (1611.7795 kb) | leading | -0.019 |
| 2695 (1614.5655 kb) | 3516 (3295.83 kb) | lagging | -0.077 | |
| 3517 (3297.708 kb) | 4067 (4599.327 kb) | NA | -0.04 | |
| AT-skew forward | 1 (0 kb) | 1106 (2493.201 kb) | NA | -0.165 |
| 1107 (2496.3 kb) | 1711 (4002.355 kb) | lagging | -0.153 | |
| 1712 (4003.385 kb) | 2028 (4599.327 kb) | leading | -0.21 | |
| AT-skew reverse | 2029 (0 kb) | 2931 (2090.0935 kb) | NA | 0.155 |
| 2932 (2091.125 kb) | 3835 (3984.507 kb) | lagging | 0.2 | |
| 3836 (3986.3175 kb) | 4067 (4599.327 kb) | leading | 0.159 |