Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Genome size (bp): 1844853
Number of genes 1562
Oriloc predictions: Origin 1275 kb Terminus 305 kb
Worning et al., 2006: Origin 1276 kb Terminus 314 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 297.595 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 1275 kb Terminus 305 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 165 | NA | 313 |
| 549 | NA | 1241 | |
| GC-skew reverse | 894 | NA | 308 |
| 1327 | NA | 1267 | |
| AT-skew forward | 82 | NA | 124 |
| 567 | NA | 1290 | |
| AT-skew reverse | 1006 | NA | 487 |
| 1311 | NA | 1241 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 165 (312.806 kb) | leading | 0.066 |
| 166 (313.33 kb) | 549 (1240.7605 kb) | lagging | -0.119 | |
| 550 (1244.8975 kb) | 795 (1844.753 kb) | leading | 0.071 | |
| GC-skew reverse | 796 (0 kb) | 894 (307.707 kb) | leading | 0.119 |
| 895 (311.537 kb) | 1327 (1266.558 kb) | lagging | -0.078 | |
| 1328 (1267.9345 kb) | 1562 (1844.753 kb) | leading | 0.125 | |
| AT-skew forward | 1 (0 kb) | 82 (124.022 kb) | leading | -0.132 |
| 83 (129.4735 kb) | 567 (1289.51 kb) | NA | -0.085 | |
| 568 (1290.6135 kb) | 795 (1844.753 kb) | leading | -0.135 | |
| AT-skew reverse | 796 (0 kb) | 1006 (487.371 kb) | NA | 0.066 |
| 1007 (488.338 kb) | 1311 (1240.589 kb) | lagging | 0.122 | |
| 1312 (1242.925 kb) | 1562 (1844.753 kb) | leading | 0.099 |