Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2499279
Number of genes 2419
Oriloc predictions: Origin 0 kb Terminus 1297 kb
Worning et al., 2006: Origin 0 kb Terminus 1103 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.038 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.04 kb, 107.17 kb, 1179.54 kb, 1390.85 kb, 1553.1 kb
Consensus predictions: Origin 0 kb Terminus 1297 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 780 | NA | 1207 |
| GC-skew reverse | 1487 | NA | 1212 |
| 1569 | NA | 1299 | |
| AT-skew forward | 606 | NA | 878 |
| 743 | NA | 1051 | |
| AT-skew reverse | 1397 | NA | 1073 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 780 (1207.469 kb) | leading | 0.109 |
| 781 (1213.49 kb) | 1094 (2498.917 kb) | lagging | -0.102 | |
| GC-skew reverse | 1095 (0 kb) | 1487 (1212.227 kb) | leading | 0.1 |
| 1488 (1213.147 kb) | 1569 (1299.1335 kb) | leading | -0.001 | |
| 1570 (1300.076 kb) | 2419 (2498.917 kb) | lagging | -0.113 | |
| AT-skew forward | 1 (0 kb) | 606 (878.4755 kb) | leading | -0.034 |
| 607 (880.166 kb) | 743 (1051.4785 kb) | leading | -0.003 | |
| 744 (1054.55 kb) | 1094 (2498.917 kb) | lagging | -0.052 | |
| AT-skew reverse | 1095 (0 kb) | 1397 (1073.496 kb) | leading | 0.05 |
| 1398 (1074.37 kb) | 2419 (2498.917 kb) | NA | 0.018 |
More G than C on the leading strand for replication.