Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma.
Genome size (bp): 1197687
Number of genes 949
Oriloc predictions: Origin 0 kb Terminus 546 kb
Worning et al., 2006: Origin 1140 kb Terminus 532 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 392.565 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 390.23 kb
Consensus predictions: Origin 0 kb Terminus 546 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 214 | 0.00667 | 537 |
| GC-skew reverse | 607 | 0 | 538 |
| AT-skew forward | 209 | 0 | 522 |
| AT-skew reverse | 616 | 0 | 557 |
| 815 | 0.04667 | 931 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 214 (536.705 kb) | leading | 0.139 |
| 215 (539.844 kb) | 416 (1197.306 kb) | lagging | 0.044 | |
| GC-skew reverse | 417 (0 kb) | 607 (537.612 kb) | leading | -0.031 |
| 608 (539.3305 kb) | 949 (1197.306 kb) | lagging | -0.13 | |
| AT-skew forward | 1 (0 kb) | 209 (522.2575 kb) | leading | -0.223 |
| 210 (523.7105 kb) | 416 (1197.306 kb) | lagging | -0.026 | |
| AT-skew reverse | 417 (0 kb) | 616 (557.142 kb) | leading | 0.019 |
| 617 (558.1065 kb) | 815 (930.8425 kb) | lagging | 0.257 | |
| 816 (932.4595 kb) | 949 (1197.306 kb) | lagging | 0.148 |
More G than C on the leading strand for replication.