Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; phagocytophilum group.
Genome size (bp): 1471282
Number of genes 1263
Oriloc predictions: Origin 0 kb Terminus 724 kb
Worning et al., 2006: Origin 1468 kb Terminus 724 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 20.704 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 502.5 kb
Consensus predictions: Origin 0 kb Terminus 724 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 335 | NA | 620 |
| GC-skew reverse | 893 | NA | 722 |
| AT-skew forward | 303 | NA | 548 |
| AT-skew reverse | 870 | NA | 652 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 335 (619.997 kb) | leading | 0.363 |
| 336 (620.393 kb) | 643 (1471.214 kb) | NA | 0.13 | |
| GC-skew reverse | 644 (0 kb) | 893 (722.036 kb) | leading | -0.108 |
| 894 (725.158 kb) | 1263 (1471.214 kb) | lagging | -0.288 | |
| AT-skew forward | 1 (0 kb) | 303 (548.4695 kb) | leading | -0.242 |
| 304 (555.334 kb) | 643 (1471.214 kb) | NA | -0.132 | |
| AT-skew reverse | 644 (0 kb) | 870 (651.706 kb) | leading | 0.102 |
| 871 (656.675 kb) | 1263 (1471.214 kb) | lagging | 0.202 |
More G than C on the leading strand for replication - for reverse encoded genes.