Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
Genome size (bp): 1799146
Number of genes 1875
Oriloc predictions: Origin 1105 kb Terminus 4 kb
Worning et al., 2006: Origin 1110 kb Terminus 1777 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1448.763 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1081.3 kb
Consensus predictions: Origin 1105 kb Terminus 4 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 516 | NA | 1107 |
| GC-skew reverse | 1597 | NA | 1104 |
| AT-skew forward | 502 | NA | 1079 |
| AT-skew reverse | 1283 | NA | 533 |
| 1598 | NA | 1105 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 516 (1106.8705 kb) | lagging | -0.075 |
| 517 (1108.181 kb) | 977 (1799.037 kb) | leading | 0.227 | |
| GC-skew reverse | 978 (0 kb) | 1597 (1103.726 kb) | lagging | -0.214 |
| 1598 (1104.8485 kb) | 1875 (1799.037 kb) | leading | 0.064 | |
| AT-skew forward | 1 (0 kb) | 502 (1079.065 kb) | lagging | -0.109 |
| 503 (1080.6745 kb) | 977 (1799.037 kb) | leading | -0.151 | |
| AT-skew reverse | 978 (0 kb) | 1283 (532.5885 kb) | lagging | 0.126 |
| 1284 (532.984 kb) | 1598 (1104.8485 kb) | lagging | 0.156 | |
| 1599 (1105.672 kb) | 1875 (1799.037 kb) | leading | 0.12 |
More G than C on the leading strand for replication.