Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Chromobacterium.
Genome size (bp): 4751080
Number of genes 4407
Oriloc predictions: Origin 192 kb Terminus 2594 kb
Worning et al., 2006: Origin 244 kb Terminus 2612 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 236.463 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.95 kb
Consensus predictions: Origin 236 kb Terminus 2612 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1395 | 0 | 2852 |
| GC-skew reverse | 3217 | 0 | 2607 |
| AT-skew forward | 115 | 0 | 238 |
| 1317 | 0 | 2624 | |
| AT-skew reverse | 2204 | 0 | 222 |
| 3218 | 0 | 2608 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1395 (2851.7175 kb) | leading | 0.01 |
| 1396 (2856.591 kb) | 2101 (4750.994 kb) | lagging | -0.131 | |
| GC-skew reverse | 2102 (0 kb) | 3217 (2606.9635 kb) | leading | 0.123 |
| 3218 (2607.539 kb) | 4407 (4750.994 kb) | lagging | -0.016 | |
| AT-skew forward | 1 (0 kb) | 115 (237.694 kb) | lagging | 0.156 |
| 116 (241.255 kb) | 1317 (2624.304 kb) | leading | -0.171 | |
| 1318 (2627.63 kb) | 2101 (4750.994 kb) | lagging | 0.125 | |
| AT-skew reverse | 2102 (0 kb) | 2204 (222.114 kb) | lagging | 0.128 |
| 2205 (222.642 kb) | 3218 (2607.539 kb) | leading | -0.116 | |
| 3219 (2609.4035 kb) | 4407 (4750.994 kb) | lagging | 0.199 |
More G than C on the leading strand for replication.