Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.
Genome size (bp): 5688987
Number of genes 4683
Oriloc predictions: Origin 0 kb Terminus 2747 kb
Worning et al., 2006: Origin 43 kb Terminus 2633 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 5056.118 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.93 kb, 3263.81 kb
Consensus predictions: Origin 0 kb Terminus 2747 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1147 | 0 | 2651 |
| GC-skew reverse | 3174 | 0 | 2759 |
| AT-skew forward | 1168 | 0 | 2739 |
| AT-skew reverse | 3186 | 0 | 2783 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1147 (2650.793 kb) | leading | 0.214 |
| 1148 (2658.724 kb) | 2137 (5688.532 kb) | lagging | -0.073 | |
| GC-skew reverse | 2138 (0 kb) | 3174 (2758.6765 kb) | leading | 0.058 |
| 3175 (2760.8015 kb) | 4683 (5688.532 kb) | lagging | -0.207 | |
| AT-skew forward | 1 (0 kb) | 1168 (2739.267 kb) | leading | -0.191 |
| 1169 (2740.0565 kb) | 2137 (5688.532 kb) | lagging | -0.071 | |
| AT-skew reverse | 2138 (0 kb) | 3186 (2783.4815 kb) | leading | 0.084 |
| 3187 (2783.9585 kb) | 4683 (5688.532 kb) | lagging | 0.184 |
More G than C on the leading strand for replication.