Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.
Genome size (bp): 2237943
Number of genes 2008
Oriloc predictions: Origin 0 kb Terminus 1095 kb
Worning et al., 2006: Origin 0 kb Terminus 1070 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1531.278 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 0 kb Terminus 1095 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 497 | 0 | 1089 |
| GC-skew reverse | 1419 | 0 | 1083 |
| AT-skew forward | 499 | 0.00667 | 1090 |
| AT-skew reverse | 1406 | 0 | 1064 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 497 (1088.746 kb) | leading | 0.104 |
| 498 (1089.249 kb) | 960 (2237.067 kb) | lagging | -0.09 | |
| GC-skew reverse | 961 (0 kb) | 1419 (1083.096 kb) | leading | 0.105 |
| 1420 (1084.173 kb) | 2008 (2237.067 kb) | lagging | -0.114 | |
| AT-skew forward | 1 (0 kb) | 499 (1089.9885 kb) | leading | -0.123 |
| 500 (1090.629 kb) | 960 (2237.067 kb) | lagging | -0.057 | |
| AT-skew reverse | 961 (0 kb) | 1406 (1064.4335 kb) | leading | 0.059 |
| 1407 (1066.287 kb) | 2008 (2237.067 kb) | lagging | 0.115 |
More G than C on the leading strand for replication.