Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 5928787
Number of genes 4982
Oriloc predictions: Origin 108 kb Terminus 3197 kb
Worning et al., 2006: Origin 5896 kb Terminus 3255 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1692.574 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.01 kb, 4253.97 kb
Consensus predictions: Origin 108 kb Terminus 3197 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 830 | NA | 2002 |
| 1077 | NA | 2511 | |
| 1455 | NA | 3253 | |
| GC-skew reverse | 3699 | NA | 3214 |
| AT-skew forward | 180 | NA | 498 |
| 1132 | NA | 2628 | |
| 1418 | NA | 3183 | |
| AT-skew reverse | 3700 | NA | 3217 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 830 (2001.572 kb) | leading | -0.021 |
| 831 (2009.4755 kb) | 1077 (2510.5245 kb) | leading | -0.004 | |
| 1078 (2510.9195 kb) | 1455 (3253.1735 kb) | leading | 0.013 | |
| 1456 (3253.5845 kb) | 2487 (5928.611 kb) | lagging | -0.093 | |
| GC-skew reverse | 2488 (0 kb) | 3699 (3213.7455 kb) | leading | 0.085 |
| 3700 (3217.4635 kb) | 4982 (5928.611 kb) | lagging | 0.006 | |
| AT-skew forward | 1 (0 kb) | 180 (497.9765 kb) | NA | -0.204 |
| 181 (498.273 kb) | 1132 (2628.029 kb) | leading | -0.278 | |
| 1133 (2629.967 kb) | 1418 (3183.22 kb) | leading | -0.252 | |
| 1419 (3184.888 kb) | 2487 (5928.611 kb) | lagging | -0.105 | |
| AT-skew reverse | 2488 (0 kb) | 3700 (3217.4635 kb) | leading | 0.114 |
| 3701 (3220.4015 kb) | 4982 (5928.611 kb) | lagging | 0.278 |
More G than C on the leading strand for replication.