Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 6181863
Number of genes 5350
Oriloc predictions: Origin 1 kb Terminus 3730 kb
Worning et al., 2006: Origin 8 kb Terminus 3731 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 9.322 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 10.3 kb
Consensus predictions: Origin 1 kb Terminus 3730 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 306 | NA | 661 |
| 1819 | NA | 3759 | |
| 2321 | NA | 4990 | |
| GC-skew reverse | 4224 | NA | 3748 |
| AT-skew forward | 1186 | NA | 2483 |
| 1795 | NA | 3711 | |
| 2163 | NA | 4536 | |
| AT-skew reverse | 4188 | NA | 3678 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 306 (660.948 kb) | leading | -0.051 |
| 307 (662.309 kb) | 1819 (3759.353 kb) | leading | -0.029 | |
| 1820 (3760.493 kb) | 2321 (4990.1835 kb) | lagging | -0.147 | |
| 2322 (4993.293 kb) | 2755 (6181.86 kb) | lagging | -0.121 | |
| GC-skew reverse | 2756 (0 kb) | 4224 (3748.178 kb) | leading | 0.123 |
| 4225 (3749.404 kb) | 5350 (6181.86 kb) | lagging | 0.019 | |
| AT-skew forward | 1 (0 kb) | 1186 (2483.1165 kb) | leading | -0.241 |
| 1187 (2484.519 kb) | 1795 (3711.375 kb) | leading | -0.219 | |
| 1796 (3720.3805 kb) | 2163 (4535.876 kb) | lagging | -0.052 | |
| 2164 (4536.652 kb) | 2755 (6181.86 kb) | lagging | -0.033 | |
| AT-skew reverse | 2756 (0 kb) | 4188 (3677.73 kb) | leading | 0.048 |
| 4189 (3679.2275 kb) | 5350 (6181.86 kb) | lagging | 0.229 |
More G than C on the leading strand for replication.