Rearranged Oriloc output example: Previous Index Next
Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira.
Genome size (bp): 4277185
Number of genes 3394
Oriloc predictions: Origin 0 kb Terminus 2132 kb
Worning et al., 2006: Origin 2 kb Terminus 2109 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2510.365 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.96 kb
Consensus predictions: Origin 0 kb Terminus 2132 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 942 | 0 | 2130 |
| GC-skew reverse | 2390 | 0 | 2127 |
| AT-skew forward | 948 | 0 | 2138 |
| AT-skew reverse | 2394 | 0.01778 | 2145 |
| 3040 | 0.00444 | 3458 | |
| 3061 | 0.00444 | 3467 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 942 (2129.952 kb) | leading | 0.127 |
| 943 (2130.3945 kb) | 1638 (4277.01 kb) | lagging | -0.149 | |
| GC-skew reverse | 1639 (0 kb) | 2390 (2126.984 kb) | leading | 0.147 |
| 2391 (2132.3645 kb) | 3394 (4277.01 kb) | lagging | -0.144 | |
| AT-skew forward | 1 (0 kb) | 948 (2137.927 kb) | leading | -0.081 |
| 949 (2139.9205 kb) | 1638 (4277.01 kb) | lagging | 0.003 | |
| AT-skew reverse | 1639 (0 kb) | 2394 (2145.416 kb) | leading | -0.005 |
| 2395 (2147.942 kb) | 3040 (3457.5575 kb) | lagging | 0.096 | |
| 3041 (3457.8225 kb) | 3061 (3466.977 kb) | lagging | -0.071 | |
| 3062 (3467.281 kb) | 3394 (4277.01 kb) | lagging | 0.104 |
More G than C on the leading strand for replication.