Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.
Genome size (bp): 4744671
Number of genes 3900
Oriloc predictions: Origin 0 kb Terminus 2581 kb
Worning et al., 2006: Origin 0 kb Terminus 2576 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4430.825 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3295.21 kb, 4709.95 kb
Consensus predictions: Origin 0 kb Terminus 2581 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1229 | NA | 2605 |
| GC-skew reverse | 2845 | NA | 2586 |
| AT-skew forward | 569 | NA | 1151 |
| 992 | NA | 2073 | |
| 1246 | NA | 2646 | |
| AT-skew reverse | 2383 | NA | 1399 |
| 2893 | NA | 2713 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1229 (2605.037 kb) | leading | 0.112 |
| 1230 (2607.548 kb) | 1907 (4744.56 kb) | lagging | -0.022 | |
| GC-skew reverse | 1908 (0 kb) | 2845 (2585.529 kb) | leading | 0.027 |
| 2846 (2587.808 kb) | 3900 (4744.56 kb) | lagging | -0.111 | |
| AT-skew forward | 1 (0 kb) | 569 (1151.075 kb) | leading | -0.206 |
| 570 (1152.6465 kb) | 992 (2073.3745 kb) | leading | -0.191 | |
| 993 (2074.038 kb) | 1246 (2646.0205 kb) | leading | -0.172 | |
| 1247 (2649.957 kb) | 1907 (4744.56 kb) | lagging | -0.127 | |
| AT-skew reverse | 1908 (0 kb) | 2383 (1398.9355 kb) | leading | 0.121 |
| 2384 (1400.477 kb) | 2893 (2712.845 kb) | leading | 0.139 | |
| 2894 (2716.8705 kb) | 3900 (4744.56 kb) | lagging | 0.199 |
More G than C on the leading strand for replication.