Rearranged Oriloc output example: Previous Index Next
Bacteria; Bacteroidetes; Bacteroidetes (class); Bacteroidales; Bacteroidaceae; Bacteroides.
Genome size (bp): 5277274
Number of genes 4578
Oriloc predictions: Origin 0 kb Terminus 2615 kb
Worning et al., 2006: Origin 5277 kb Terminus 2617 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 272.461 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 4363.71 kb
Consensus predictions: Origin 0 kb Terminus 2615 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1231 | NA | 2614 |
| GC-skew reverse | 3248 | NA | 2626 |
| AT-skew forward | 1222 | NA | 2601 |
| AT-skew reverse | 3231 | NA | 2580 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1231 (2613.6105 kb) | leading | 0.184 |
| 1232 (2613.847 kb) | 2234 (5276.884 kb) | lagging | -0.114 | |
| GC-skew reverse | 2235 (0 kb) | 3248 (2626.3315 kb) | leading | 0.124 |
| 3249 (2627.1425 kb) | 4578 (5276.884 kb) | lagging | -0.159 | |
| AT-skew forward | 1 (0 kb) | 1222 (2600.862 kb) | leading | -0.2 |
| 1223 (2602.6225 kb) | 2234 (5276.884 kb) | lagging | 0.058 | |
| AT-skew reverse | 2235 (0 kb) | 3231 (2580.253 kb) | leading | -0.052 |
| 3232 (2583.1175 kb) | 4578 (5276.884 kb) | lagging | 0.194 |
More G than C on the leading strand for replication.