Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Genome size (bp): 3510148
Number of genes 2995
Oriloc predictions: Origin 3009 kb Terminus 1086 kb
Worning et al., 2006: Origin 2960 kb Terminus 1081 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1552.022 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.85 kb
Consensus predictions: Origin 3009 kb Terminus 1086 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 483 | NA | 1106 |
| 1071 | NA | 2759 | |
| GC-skew reverse | 1761 | NA | 1085 |
| 2750 | NA | 2953 | |
| AT-skew forward | 468 | NA | 1070 |
| 891 | NA | 2267 | |
| AT-skew reverse | 1784 | NA | 1132 |
| 2386 | NA | 2350 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 483 (1106.126 kb) | leading | -0.005 |
| 484 (1113.578 kb) | 1071 (2759.2005 kb) | lagging | -0.066 | |
| 1072 (2760.262 kb) | 1358 (3509.727 kb) | NA | -0.01 | |
| GC-skew reverse | 1359 (0 kb) | 1761 (1085.097 kb) | leading | 0.046 |
| 1762 (1089.9365 kb) | 2750 (2952.766 kb) | lagging | -0.005 | |
| 2751 (2953.251 kb) | 2995 (3509.727 kb) | leading | 0.04 | |
| AT-skew forward | 1 (0 kb) | 468 (1069.507 kb) | leading | -0.238 |
| 469 (1072.2365 kb) | 891 (2266.6955 kb) | lagging | -0.037 | |
| 892 (2267.078 kb) | 1358 (3509.727 kb) | NA | -0.135 | |
| AT-skew reverse | 1359 (0 kb) | 1784 (1131.6835 kb) | leading | 0.113 |
| 1785 (1133.125 kb) | 2386 (2349.6165 kb) | lagging | 0.244 | |
| 2387 (2350.6115 kb) | 2995 (3509.727 kb) | NA | 0.178 |