Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.
Genome size (bp): 4085304
Number of genes 3414
Oriloc predictions: Origin 0 kb Terminus 2123 kb
Worning et al., 2006: Origin 4085 kb Terminus 2066 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3808.111 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 8.08 kb, 2591.74 kb
Consensus predictions: Origin 0 kb Terminus 2123 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 167 | 0 | 311 |
| 217 | 0.00222 | 383 | |
| 1053 | 0 | 2121 | |
| GC-skew reverse | 2509 | 0 | 2069 |
| AT-skew forward | 949 | 0 | 1864 |
| AT-skew reverse | 2530 | 0 | 2129 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 167 (310.7515 kb) | leading | 0.174 |
| 168 (313.818 kb) | 217 (383.2045 kb) | leading | -0.08 | |
| 218 (384.813 kb) | 1053 (2120.645 kb) | leading | 0.124 | |
| 1054 (2121.5165 kb) | 1796 (4085.021 kb) | lagging | -0.109 | |
| GC-skew reverse | 1797 (0 kb) | 2509 (2068.9 kb) | leading | 0.104 |
| 2510 (2070.3435 kb) | 3414 (4085.021 kb) | lagging | -0.132 | |
| AT-skew forward | 1 (0 kb) | 949 (1863.6085 kb) | leading | -0.152 |
| 950 (1864.1425 kb) | 1796 (4085.021 kb) | lagging | -0.072 | |
| AT-skew reverse | 1797 (0 kb) | 2530 (2128.7995 kb) | leading | 0.057 |
| 2531 (2130.4195 kb) | 3414 (4085.021 kb) | lagging | 0.155 |
More G than C on the leading strand for replication.