Rearranged Oriloc output example: Previous Index Next
Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
Genome size (bp): 2696255
Number of genes 2526
Oriloc predictions: Origin 1594 kb Terminus 0 kb
Worning et al., 2006: Origin 1595 kb Terminus 206 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1620.985 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 502.98 kb
Consensus predictions: Origin 1620 kb Terminus 0 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 722 | NA | 1557 |
| GC-skew reverse | 2121 | NA | 1762 |
| AT-skew forward | 752 | NA | 1613 |
| AT-skew reverse | 1722 | NA | 893 |
| 2078 | NA | 1647 | |
| 2298 | NA | 2206 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 722 (1557.1275 kb) | lagging | -0.06 |
| 723 (1558.411 kb) | 1320 (2695.791 kb) | leading | -0.019 | |
| GC-skew reverse | 1321 (0 kb) | 2121 (1761.9565 kb) | lagging | 0.019 |
| 2122 (1763.0685 kb) | 2526 (2695.791 kb) | leading | 0.066 | |
| AT-skew forward | 1 (0 kb) | 752 (1612.691 kb) | lagging | -0.164 |
| 753 (1613.139 kb) | 1320 (2695.791 kb) | leading | -0.21 | |
| AT-skew reverse | 1321 (0 kb) | 1722 (892.5545 kb) | lagging | 0.187 |
| 1723 (894.29 kb) | 2078 (1646.921 kb) | lagging | 0.196 | |
| 2079 (1647.7855 kb) | 2298 (2206.039 kb) | leading | 0.17 | |
| 2299 (2209.6335 kb) | 2526 (2695.791 kb) | leading | 0.159 |
More G than C on the leading strand for replication.