Rearranged Oriloc output example: Previous Index Next




Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus.
Genome size (bp): 1993564
Number of genes 1864
Oriloc predictions: Origin 0 kb Terminus 1104 kb
Worning et al., 2006: Origin 0 kb Terminus 1105 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1993.284 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb, 24.98 kb, 475.59 kb, 1535.59 kb
Consensus predictions: Origin 0 kb Terminus 1104 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward80701085
GC-skew reverse124201038
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)807 (1084.535 kb) leading0.183
808 (1084.669 kb)1020 (1993.118 kb) lagging-0.186
GC-skew reverse 1021 (0 kb)1242 (1038.1555 kb) leading0.198
1243 (1039.328 kb)1864 (1993.118 kb) lagging-0.166
More G than C on the leading strand for replication.