Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.
Genome size (bp): 4317977
Number of genes 4212
Oriloc predictions: Origin 136 kb Terminus 2352 kb
Worning et al., 2006: Origin 185 kb Terminus 2256 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3425.348 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.76 kb, 1011.1 kb
Consensus predictions: Origin 136 kb Terminus 2352 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 82 | 0 | 138 |
| 1294 | 0.00333 | 2294 | |
| GC-skew reverse | 3125 | 0 | 2108 |
| AT-skew forward | 1391 | 0 | 2498 |
| AT-skew reverse | 3226 | 0.00667 | 2337 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 82 (138.344 kb) | lagging | -0.064 |
| 83 (147.3865 kb) | 1294 (2293.7885 kb) | leading | 0.016 | |
| 1295 (2295.208 kb) | 2217 (4317.478 kb) | lagging | -0.061 | |
| GC-skew reverse | 2218 (0 kb) | 3125 (2107.624 kb) | leading | 0.105 |
| 3126 (2108.332 kb) | 4212 (4317.478 kb) | lagging | 0.009 | |
| AT-skew forward | 1 (0 kb) | 1391 (2497.936 kb) | leading | -0.295 |
| 1392 (2498.565 kb) | 2217 (4317.478 kb) | lagging | -0.22 | |
| AT-skew reverse | 2218 (0 kb) | 3226 (2337.3905 kb) | leading | 0.223 |
| 3227 (2338.165 kb) | 4212 (4317.478 kb) | lagging | 0.276 |
More G than C on the leading strand for replication.