Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome size (bp): 5148708
Number of genes 4273
Oriloc predictions: Origin 5018 kb Terminus 2606 kb
Worning et al., 2006: Origin 5061 kb Terminus 2537 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1564.534 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb, 2532.59 kb
Consensus predictions: Origin 5018 kb Terminus 2606 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1184 | NA | 2584 |
| GC-skew reverse | 3055 | NA | 2540 |
| 3301 | NA | 3151 | |
| AT-skew forward | 1247 | NA | 2724 |
| AT-skew reverse | 2753 | NA | 1652 |
| 3092 | NA | 2632 | |
| 3906 | NA | 4355 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1184 (2583.5915 kb) | leading | -0.002 |
| 1185 (2584.786 kb) | 2144 (5148.507 kb) | lagging | -0.075 | |
| GC-skew reverse | 2145 (0 kb) | 3055 (2540.2995 kb) | leading | 0.069 |
| 3056 (2540.5775 kb) | 3301 (3151.002 kb) | lagging | -0.023 | |
| 3302 (3151.515 kb) | 4273 (5148.507 kb) | lagging | -0.003 | |
| AT-skew forward | 1 (0 kb) | 1247 (2724.249 kb) | leading | -0.228 |
| 1248 (2724.866 kb) | 2144 (5148.507 kb) | lagging | -0.123 | |
| AT-skew reverse | 2145 (0 kb) | 2753 (1652.0285 kb) | leading | 0.153 |
| 2754 (1655.42 kb) | 3092 (2632.489 kb) | leading | 0.117 | |
| 3093 (2634.409 kb) | 3906 (4355.186 kb) | lagging | 0.236 | |
| 3907 (4361.6805 kb) | 4273 (5148.507 kb) | lagging | 0.21 |
More G than C on the leading strand for replication.