Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome size (bp): 5076188
Number of genes 4181
Oriloc predictions: Origin 4944 kb Terminus 2371 kb
Worning et al., 2006: Origin 5 kb Terminus 2441 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1726.68 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb, 2436.89 kb, 2446.65 kb
Consensus predictions: Origin 4944 kb Terminus 2371 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1207 | 0.00667 | 2654 |
| GC-skew reverse | 2971 | 0 | 2381 |
| AT-skew forward | 1048 | 0 | 2142 |
| AT-skew reverse | 2918 | 0 | 2261 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1207 (2653.757 kb) | leading | -0.002 |
| 1208 (2655.307 kb) | 2095 (5075.986 kb) | lagging | -0.071 | |
| GC-skew reverse | 2096 (0 kb) | 2971 (2380.9105 kb) | leading | 0.075 |
| 2972 (2389.1925 kb) | 4181 (5075.986 kb) | lagging | -0.007 | |
| AT-skew forward | 1 (0 kb) | 1048 (2142.1395 kb) | leading | -0.237 |
| 1049 (2143.3865 kb) | 2095 (5075.986 kb) | lagging | -0.144 | |
| AT-skew reverse | 2096 (0 kb) | 2918 (2261.2395 kb) | leading | 0.119 |
| 2919 (2263.4075 kb) | 4181 (5075.986 kb) | lagging | 0.227 |
More G than C on the leading strand for replication.