Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2685015
Number of genes 2676
Oriloc predictions: Origin 24 kb Terminus 1323 kb
Worning et al., 2006: Origin 2586 kb Terminus 1571 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 29.095 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.19 kb, 1276.36 kb, 2329.02 kb
Consensus predictions: Origin 24 kb Terminus 1323 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 934 | NA | 1341 |
| GC-skew reverse | 1788 | NA | 1289 |
| 2225 | NA | 2092 | |
| AT-skew forward | 581 | NA | 844 |
| 1144 | NA | 1741 | |
| AT-skew reverse | 1844 | NA | 1587 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 934 (1341.354 kb) | leading | 0.052 |
| 935 (1341.8755 kb) | 1424 (2684.844 kb) | lagging | -0.081 | |
| GC-skew reverse | 1425 (0 kb) | 1788 (1288.8785 kb) | leading | 0.12 |
| 1789 (1293.8315 kb) | 2225 (2092.4775 kb) | lagging | -0.045 | |
| 2226 (2094.708 kb) | 2676 (2684.844 kb) | lagging | -0.064 | |
| AT-skew forward | 1 (0 kb) | 581 (844.2665 kb) | leading | -0.018 |
| 582 (844.796 kb) | 1144 (1741.4325 kb) | NA | -0.027 | |
| 1145 (1755.7695 kb) | 1424 (2684.844 kb) | lagging | -0.063 | |
| AT-skew reverse | 1425 (0 kb) | 1844 (1587.1575 kb) | leading | 0.057 |
| 1845 (1589.6275 kb) | 2676 (2684.844 kb) | lagging | -0.001 |
More G than C on the leading strand for replication.