Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.
Genome size (bp): 3665893
Number of genes 3119
Oriloc predictions: Origin 2 kb Terminus 1888 kb
Worning et al., 2006: Origin 2 kb Terminus 1882 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1823.666 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.75 kb
Consensus predictions: Origin 2 kb Terminus 1888 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 963 | 0 | 1873 |
| 1398 | 0 | 3455 | |
| GC-skew reverse | 2130 | 0 | 1909 |
| 3008 | 0.03667 | 3458 | |
| AT-skew forward | 952 | 0 | 1854 |
| 1393 | 0.04333 | 3438 | |
| AT-skew reverse | 2107 | 0 | 1874 |
| 2921 | 0.01667 | 3272 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 963 (1873.202 kb) | leading | 0.023 |
| 964 (1874.681 kb) | 1398 (3454.651 kb) | lagging | -0.213 | |
| 1399 (3454.966 kb) | 1484 (3665.632 kb) | lagging | -0.102 | |
| GC-skew reverse | 1485 (0 kb) | 2130 (1908.619 kb) | leading | 0.185 |
| 2131 (1909.9865 kb) | 3008 (3458.1925 kb) | lagging | -0.019 | |
| 3009 (3459.9825 kb) | 3119 (3665.632 kb) | lagging | 0.051 | |
| AT-skew forward | 1 (0 kb) | 952 (1853.9505 kb) | leading | -0.304 |
| 953 (1854.575 kb) | 1393 (3437.91 kb) | lagging | -0.047 | |
| 1394 (3439.7075 kb) | 1484 (3665.632 kb) | lagging | -0.121 | |
| AT-skew reverse | 1485 (0 kb) | 2107 (1873.5285 kb) | leading | 0.035 |
| 2108 (1880.507 kb) | 2921 (3271.565 kb) | lagging | 0.327 | |
| 2922 (3273.391 kb) | 3119 (3665.632 kb) | lagging | 0.225 |
More G than C on the leading strand for replication.