Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.
Genome size (bp): 2427734
Number of genes 2192
Oriloc predictions: Origin 65 kb Terminus 1293 kb
Worning et al., 2006: Origin 54 kb Terminus 1320 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2427.486 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.7 kb, 1125.83 kb
Consensus predictions: Origin 65 kb Terminus 1293 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 38 | 0 | 66 |
| 423 | 0.00667 | 729 | |
| 450 | 0.01 | 764 | |
| 796 | 0 | 1286 | |
| GC-skew reverse | 1592 | 0 | 1272 |
| AT-skew forward | 791 | 0 | 1279 |
| AT-skew reverse | 1587 | 0 | 1231 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 38 (66.3575 kb) | lagging | -0.124 |
| 39 (67.1255 kb) | 423 (728.6795 kb) | leading | 0.222 | |
| 424 (734.7235 kb) | 450 (763.987 kb) | leading | 0.009 | |
| 451 (764.5035 kb) | 796 (1285.526 kb) | leading | 0.211 | |
| 797 (1288.1035 kb) | 1214 (2427.452 kb) | lagging | -0.142 | |
| GC-skew reverse | 1215 (0 kb) | 1592 (1271.9675 kb) | leading | 0.143 |
| 1593 (1276.181 kb) | 2192 (2427.452 kb) | lagging | -0.225 | |
| AT-skew forward | 1 (0 kb) | 791 (1278.896 kb) | leading | -0.132 |
| 792 (1279.5865 kb) | 1214 (2427.452 kb) | lagging | -0.01 | |
| AT-skew reverse | 1215 (0 kb) | 1587 (1231.1895 kb) | leading | 0.003 |
| 1588 (1232.836 kb) | 2192 (2427.452 kb) | lagging | 0.126 |
More G than C on the leading strand for replication.