Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2742531
Number of genes 2510
Oriloc predictions: Origin 3 kb Terminus 1344 kb
Worning et al., 2006: Origin 0 kb Terminus 1372 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2058.578 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1443.84 kb, 1665.62 kb
Consensus predictions: Origin 3 kb Terminus 1344 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 922 | NA | 1437 |
| GC-skew reverse | 1520 | NA | 1358 |
| 2202 | NA | 2258 | |
| AT-skew forward | 683 | NA | 1045 |
| 875 | NA | 1307 | |
| AT-skew reverse | 1488 | NA | 1117 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 922 (1437.0975 kb) | leading | 0.152 |
| 923 (1439.81 kb) | 1223 (2742.317 kb) | lagging | -0.147 | |
| GC-skew reverse | 1224 (0 kb) | 1520 (1358.381 kb) | leading | 0.158 |
| 1521 (1359.4275 kb) | 2202 (2258.1115 kb) | lagging | -0.127 | |
| 2203 (2259.5935 kb) | 2510 (2742.317 kb) | lagging | -0.196 | |
| AT-skew forward | 1 (0 kb) | 683 (1044.6785 kb) | leading | 0 |
| 684 (1045.1095 kb) | 875 (1306.7465 kb) | leading | 0.019 | |
| 876 (1307.217 kb) | 1223 (2742.317 kb) | lagging | -0.047 | |
| AT-skew reverse | 1224 (0 kb) | 1488 (1117.463 kb) | leading | 0.039 |
| 1489 (1119.3315 kb) | 2510 (2742.317 kb) | lagging | -0.002 |
More G than C on the leading strand for replication.