Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2872769
Number of genes 2560
Oriloc predictions: Origin 0 kb Terminus 1396 kb
Worning et al., 2006: Origin 1 kb Terminus 1400 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2159.927 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.22 kb
Consensus predictions: Origin 0 kb Terminus 1396 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 952 | NA | 1423 |
| GC-skew reverse | 1544 | NA | 1409 |
| 2395 | NA | 2606 | |
| AT-skew forward | 711 | NA | 1095 |
| 904 | NA | 1338 | |
| AT-skew reverse | 1519 | NA | 1209 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 952 (1422.711 kb) | leading | 0.148 |
| 953 (1423.7935 kb) | 1235 (2872.582 kb) | lagging | -0.155 | |
| GC-skew reverse | 1236 (0 kb) | 1544 (1408.508 kb) | leading | 0.154 |
| 1545 (1409.314 kb) | 2395 (2605.9375 kb) | lagging | -0.136 | |
| 2396 (2606.5005 kb) | 2560 (2872.582 kb) | lagging | -0.172 | |
| AT-skew forward | 1 (0 kb) | 711 (1094.549 kb) | leading | 0 |
| 712 (1095.646 kb) | 904 (1338.285 kb) | leading | 0.02 | |
| 905 (1339.1055 kb) | 1235 (2872.582 kb) | lagging | -0.043 | |
| AT-skew reverse | 1236 (0 kb) | 1519 (1209.0945 kb) | leading | 0.024 |
| 1520 (1218.097 kb) | 2560 (2872.582 kb) | lagging | -0.006 |
More G than C on the leading strand for replication.