Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
Genome size (bp): 3561584
Number of genes 3324
Oriloc predictions: Origin 119 kb Terminus 2033 kb
Worning et al., 2006: Origin 120 kb Terminus 2023 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 118.317 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.77 kb
Consensus predictions: Origin 119 kb Terminus 2033 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1093 | 0 | 2106 |
| GC-skew reverse | 2526 | 0 | 2055 |
| AT-skew forward | 1064 | 0 | 2020 |
| AT-skew reverse | 1883 | 0.03667 | 417 |
| 2510 | 0.00667 | 2016 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1093 (2105.6135 kb) | leading | -0.099 |
| 1094 (2106.0215 kb) | 1678 (3561.082 kb) | lagging | -0.149 | |
| GC-skew reverse | 1679 (0 kb) | 2526 (2055.2755 kb) | leading | 0.153 |
| 2527 (2056.3885 kb) | 3324 (3561.082 kb) | lagging | 0.088 | |
| AT-skew forward | 1 (0 kb) | 1064 (2020.0765 kb) | leading | -0.271 |
| 1065 (2021.4565 kb) | 1678 (3561.082 kb) | lagging | -0.095 | |
| AT-skew reverse | 1679 (0 kb) | 1883 (416.7905 kb) | NA | 0.162 |
| 1884 (417.6275 kb) | 2510 (2015.8165 kb) | leading | 0.069 | |
| 2511 (2019.0955 kb) | 3324 (3561.082 kb) | lagging | 0.269 |
More G than C on the leading strand for replication.