Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.
Genome size (bp): 5057531
Number of genes 4008
Oriloc predictions: Origin 5 kb Terminus 2507 kb
Worning et al., 2006: Origin 5019 kb Terminus 2456 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4045.075 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 5018.86 kb
Consensus predictions: Origin 5 kb Terminus 2507 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1225 | 0 | 2518 |
| GC-skew reverse | 2706 | 0 | 2460 |
| AT-skew forward | 244 | 0.01333 | 521 |
| 1216 | 0 | 2490 | |
| AT-skew reverse | 2746 | 0 | 2566 |
| 3653 | 0.04667 | 4346 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1225 (2517.9665 kb) | leading | 0.033 |
| 1226 (2519.29 kb) | 1962 (5057.2 kb) | lagging | -0.255 | |
| GC-skew reverse | 1963 (0 kb) | 2706 (2459.675 kb) | leading | 0.257 |
| 2707 (2460.6975 kb) | 4008 (5057.2 kb) | lagging | -0.04 | |
| AT-skew forward | 1 (0 kb) | 244 (520.5385 kb) | leading | -0.056 |
| 245 (521.029 kb) | 1216 (2489.525 kb) | leading | -0.131 | |
| 1217 (2495.997 kb) | 1962 (5057.2 kb) | lagging | 0.062 | |
| AT-skew reverse | 1963 (0 kb) | 2746 (2566.09 kb) | leading | -0.061 |
| 2747 (2567.2485 kb) | 3653 (4345.6065 kb) | lagging | 0.122 | |
| 3654 (4346.057 kb) | 4008 (5057.2 kb) | lagging | 0.07 |
More G than C on the leading strand for replication.