Rearranged Oriloc output example: Previous Index Next
Bacteria; Actinobacteria; Rubrobacteridae; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.
Genome size (bp): 3225748
Number of genes 3140
Oriloc predictions: Origin 59 kb Terminus 1538 kb
Worning et al., 2006: Origin 43 kb Terminus 1455 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.624 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.68 kb
Consensus predictions: Origin 59 kb Terminus 1538 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 879 | 0.01333 | 1438 |
| GC-skew reverse | 1918 | 0.01333 | 1195 |
| AT-skew forward | 993 | 0 | 1973 |
| AT-skew reverse | 1992 | 0 | 1465 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 879 (1437.7175 kb) | leading | -0.019 |
| 880 (1438.046 kb) | 1462 (3225.74 kb) | lagging | -0.048 | |
| GC-skew reverse | 1463 (0 kb) | 1918 (1195.302 kb) | leading | 0.051 |
| 1919 (1198.7525 kb) | 3140 (3225.74 kb) | lagging | 0.015 | |
| AT-skew forward | 1 (0 kb) | 993 (1972.914 kb) | leading | -0.034 |
| 994 (1973.708 kb) | 1462 (3225.74 kb) | lagging | 0.251 | |
| AT-skew reverse | 1463 (0 kb) | 1992 (1465.4695 kb) | leading | -0.266 |
| 1993 (1466.175 kb) | 3140 (3225.74 kb) | lagging | 0.046 |
More G than C on the leading strand for replication.