Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.
Genome size (bp): 5513844
Number of genes 4886
Oriloc predictions: Origin 0 kb Terminus 2943 kb
Worning et al., 2006: Origin 914 kb Terminus 2936 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3033.628 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.47 kb, 1929.94 kb, 2529.84 kb
Consensus predictions: Origin 0 kb Terminus 2943 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1582 | 0 | 3007 |
| GC-skew reverse | 3545 | 0.01333 | 3003 |
| AT-skew forward | 1608 | 0 | 3089 |
| AT-skew reverse | 3652 | 0.00667 | 3206 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1582 (3006.539 kb) | leading | -0.044 |
| 1583 (3007.502 kb) | 2392 (5513.389 kb) | lagging | -0.088 | |
| GC-skew reverse | 2393 (0 kb) | 3545 (3003.399 kb) | leading | 0.082 |
| 3546 (3006.95 kb) | 4886 (5513.389 kb) | lagging | 0.045 | |
| AT-skew forward | 1 (0 kb) | 1608 (3089.206 kb) | leading | -0.203 |
| 1609 (3093.2475 kb) | 2392 (5513.389 kb) | lagging | -0.139 | |
| AT-skew reverse | 2393 (0 kb) | 3652 (3205.9805 kb) | leading | 0.148 |
| 3653 (3206.553 kb) | 4886 (5513.389 kb) | lagging | 0.223 |
More G than C on the leading strand for replication.