Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.
Genome size (bp): 2971517
Number of genes 2753
Oriloc predictions: Origin 4 kb Terminus 1578 kb
Worning et al., 2006: Origin 5 kb Terminus 1578 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2052.904 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.75 kb, 215.05 kb
Consensus predictions: Origin 4 kb Terminus 1578 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 767 | 0 | 1583 |
| GC-skew reverse | 1952 | 0 | 1584 |
| AT-skew forward | 738 | 0 | 1514 |
| AT-skew reverse | 1925 | 0 | 1546 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 767 (1583.3605 kb) | leading | 0.045 |
| 768 (1584.228 kb) | 1248 (2971.284 kb) | lagging | -0.179 | |
| GC-skew reverse | 1249 (0 kb) | 1952 (1583.9045 kb) | leading | 0.145 |
| 1953 (1586.2405 kb) | 2753 (2971.284 kb) | lagging | -0.051 | |
| AT-skew forward | 1 (0 kb) | 738 (1513.565 kb) | leading | -0.254 |
| 739 (1514.016 kb) | 1248 (2971.284 kb) | lagging | -0.041 | |
| AT-skew reverse | 1249 (0 kb) | 1925 (1546.012 kb) | leading | 0.036 |
| 1926 (1546.443 kb) | 2753 (2971.284 kb) | lagging | 0.234 |
More G than C on the leading strand for replication.