Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.
Genome size (bp): 5200264
Number of genes 4817
Oriloc predictions: Origin 4 kb Terminus 2592 kb
Worning et al., 2006: Origin 5182 kb Terminus 2594 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3840.786 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.74 kb, 3764.01 kb
Consensus predictions: Origin 4 kb Terminus 2592 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1387 | 0 | 2665 |
| GC-skew reverse | 3490 | 0 | 2538 |
| AT-skew forward | 1337 | 0 | 2549 |
| AT-skew reverse | 3509 | 0 | 2609 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1387 (2665.2485 kb) | leading | -0.028 |
| 1388 (2666.8615 kb) | 2434 (5199.868 kb) | lagging | -0.1 | |
| GC-skew reverse | 2435 (0 kb) | 3490 (2537.688 kb) | leading | 0.082 |
| 3491 (2538.9555 kb) | 4817 (5199.868 kb) | lagging | 0.037 | |
| AT-skew forward | 1 (0 kb) | 1337 (2549.1135 kb) | leading | -0.227 |
| 1338 (2549.4045 kb) | 2434 (5199.868 kb) | lagging | -0.08 | |
| AT-skew reverse | 2435 (0 kb) | 3509 (2609.474 kb) | leading | 0.094 |
| 3510 (2612.0485 kb) | 4817 (5199.868 kb) | lagging | 0.235 |
More G than C on the leading strand for replication.