Rearranged Oriloc output example: Previous Index Next
Bacteria; Bacteroidetes; Bacteroidetes (class); Bacteroidales; Porphyromonadaceae; Porphyromonas.
Genome size (bp): 2343476
Number of genes 1909
Oriloc predictions: Origin 13 kb Terminus 1186 kb
Worning et al., 2006: Origin 2329 kb Terminus 1168 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2098.396 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb
Consensus predictions: Origin 13 kb Terminus 1186 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew reverse | 1379 | 0 | 1169 |
| AT-skew forward | 243 | 0 | 575 |
| AT-skew reverse | 1374 | 0 | 1154 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew reverse | 923 (0 kb) | 1379 (1169.4065 kb) | leading | 0.091 |
| 1380 (1171.4145 kb) | 1909 (2342.801 kb) | lagging | 0.024 | |
| AT-skew forward | 1 (0 kb) | 243 (574.7585 kb) | leading | -0.151 |
| 244 (575.858 kb) | 922 (2342.801 kb) | NA | -0.09 | |
| AT-skew reverse | 923 (0 kb) | 1374 (1153.7455 kb) | leading | 0.06 |
| 1375 (1155.6425 kb) | 1909 (2342.801 kb) | lagging | 0.126 |
More G than C on the leading strand for replication - for reverse encoded genes.