Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Genome size (bp): 4895836
Number of genes 4430
Oriloc predictions: Origin 2 kb Terminus 2499 kb
Worning et al., 2006: Origin 260 kb Terminus 2500 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4844.087 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.01 kb
Consensus predictions: Origin 0 kb Terminus 2499 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1297 | NA | 2539 |
| GC-skew reverse | 3154 | NA | 2482 |
| AT-skew forward | 1192 | NA | 2316 |
| AT-skew reverse | 3156 | NA | 2485 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1297 (2538.9415 kb) | leading | 0.015 |
| 1298 (2540.004 kb) | 2207 (4895.635 kb) | lagging | -0.072 | |
| GC-skew reverse | 2208 (0 kb) | 3154 (2482.261 kb) | leading | 0.065 |
| 3155 (2483.609 kb) | 4430 (4895.635 kb) | lagging | -0.002 | |
| AT-skew forward | 1 (0 kb) | 1192 (2315.639 kb) | leading | -0.193 |
| 1193 (2316.5435 kb) | 2207 (4895.635 kb) | lagging | -0.096 | |
| AT-skew reverse | 2208 (0 kb) | 3156 (2485.027 kb) | leading | 0.09 |
| 3157 (2487.3125 kb) | 4430 (4895.635 kb) | lagging | 0.188 |
More G than C on the leading strand for replication.