Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Genome size (bp): 3809201
Number of genes 3275
Oriloc predictions: Origin 1 kb Terminus 2649 kb
Worning et al., 2006: Origin 4 kb Terminus 1519 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2360.432 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3691.15 kb
Consensus predictions: Origin 0 kb Terminus 2649 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1334 | NA | 2709 |
| GC-skew reverse | 2656 | NA | 2646 |
| AT-skew forward | 1308 | NA | 2620 |
| AT-skew reverse | 2652 | NA | 2629 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1334 (2709.46 kb) | leading | 0.006 |
| 1335 (2710.307 kb) | 1667 (3808.859 kb) | lagging | -0.079 | |
| GC-skew reverse | 1668 (0 kb) | 2656 (2646.1865 kb) | leading | 0.077 |
| 2657 (2651.4055 kb) | 3275 (3808.859 kb) | lagging | -0.015 | |
| AT-skew forward | 1 (0 kb) | 1308 (2620.339 kb) | leading | -0.253 |
| 1309 (2625.2545 kb) | 1667 (3808.859 kb) | lagging | -0.064 | |
| AT-skew reverse | 1668 (0 kb) | 2652 (2629.3945 kb) | leading | 0.039 |
| 2653 (2631.4555 kb) | 3275 (3808.859 kb) | lagging | 0.229 |
More G than C on the leading strand for replication.