Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.
Genome size (bp): 4545906
Number of genes 3754
Oriloc predictions: Origin 0 kb Terminus 2168 kb
Worning et al., 2006: Origin 4531 kb Terminus 2171 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3324.546 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.7 kb, 1908.35 kb
Consensus predictions: Origin 0 kb Terminus 2168 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 68 | 0 | 116 |
| 1128 | 0 | 2192 | |
| GC-skew reverse | 2565 | 0 | 2181 |
| AT-skew forward | 1199 | 0 | 2411 |
| AT-skew reverse | 2589 | 0 | 2236 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 68 (115.748 kb) | leading | 0.184 |
| 69 (116.2885 kb) | 1128 (2192.0895 kb) | leading | 0.001 | |
| 1129 (2192.7045 kb) | 1848 (4545.451 kb) | lagging | -0.17 | |
| GC-skew reverse | 1849 (0 kb) | 2565 (2181.352 kb) | leading | 0.153 |
| 2566 (2184.312 kb) | 3754 (4545.451 kb) | lagging | -0.019 | |
| AT-skew forward | 1 (0 kb) | 1199 (2410.766 kb) | leading | -0.133 |
| 1200 (2412.729 kb) | 1848 (4545.451 kb) | lagging | -0.063 | |
| AT-skew reverse | 1849 (0 kb) | 2589 (2236.39 kb) | leading | 0.06 |
| 2590 (2237.0955 kb) | 3754 (4545.451 kb) | lagging | 0.139 |
More G than C on the leading strand for replication.