Rearranged Oriloc output example: Index Next




Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae.
Genome size (bp): 5650368
Number of genes 4777
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 930 kb Terminus 2625 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1264.387 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.73 kb, 4005.22 kb
Consensus predictions: Origin 1264 kb Terminus 2944 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew reverse35420.022969
AT-skew forward12480.026672800
AT-skew reverse33300.013332525
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew reverse 2350 (0 kb)3542 (2969.2575 kb) NA0.09
3543 (2973.28 kb)4777 (5649.92 kb) lagging0.042
AT-skew forward 1 (0 kb)1248 (2799.932 kb) NA-0.114
1249 (2801.269 kb)2349 (5649.92 kb) lagging-0.079
AT-skew reverse 2350 (0 kb)3330 (2525.4965 kb) NA0.088
3331 (2527.5545 kb)4777 (5649.92 kb) lagging0.125