Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus.
Genome size (bp): 1860355
Number of genes 1898
Oriloc predictions: Origin 0 kb Terminus 927 kb
Worning et al., 2006: Origin 1840 kb Terminus 929 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1780.619 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.88 kb
Consensus predictions: Origin 0 kb Terminus 927 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 778 | NA | 918 |
| GC-skew reverse | 1185 | NA | 932 |
| 1323 | NA | 1099 | |
| 1797 | NA | 1693 | |
| AT-skew forward | 432 | NA | 529 |
| 470 | NA | 562 | |
| 632 | NA | 750 | |
| AT-skew reverse | 1498 | NA | 1320 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 778 (918.0835 kb) | leading | 0.062 |
| 779 (918.902 kb) | 1003 (1860.321 kb) | lagging | -0.192 | |
| GC-skew reverse | 1004 (0 kb) | 1185 (931.5085 kb) | leading | 0.171 |
| 1186 (933.5135 kb) | 1323 (1098.655 kb) | lagging | -0.115 | |
| 1324 (1099.46 kb) | 1797 (1693.308 kb) | lagging | -0.069 | |
| 1798 (1695.6755 kb) | 1898 (1860.321 kb) | lagging | -0.032 | |
| AT-skew forward | 1 (0 kb) | 432 (529.445 kb) | leading | -0.13 |
| 433 (530.419 kb) | 470 (562.443 kb) | leading | -0.004 | |
| 471 (564.587 kb) | 632 (750.418 kb) | leading | -0.12 | |
| 633 (751.2035 kb) | 1003 (1860.321 kb) | NA | -0.137 | |
| AT-skew reverse | 1004 (0 kb) | 1498 (1320.422 kb) | NA | 0.128 |
| 1499 (1322.0495 kb) | 1898 (1860.321 kb) | lagging | 0.093 |