Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus.
Genome size (bp): 1900521
Number of genes 1865
Oriloc predictions: Origin 0 kb Terminus 878 kb
Worning et al., 2006: Origin 1890 kb Terminus 893 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1820.566 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.91 kb, 287.11 kb
Consensus predictions: Origin 0 kb Terminus 878 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 688 | NA | 878 |
| GC-skew reverse | 1041 | NA | 869 |
| 1188 | NA | 1050 | |
| 1770 | NA | 1727 | |
| AT-skew forward | 123 | NA | 166 |
| 570 | NA | 748 | |
| 618 | NA | 789 | |
| AT-skew reverse | 1120 | NA | 984 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 688 (878.4185 kb) | leading | 0.041 |
| 689 (881.4105 kb) | 906 (1900.517 kb) | lagging | -0.198 | |
| GC-skew reverse | 907 (0 kb) | 1041 (869.142 kb) | leading | 0.217 |
| 1042 (874.9435 kb) | 1188 (1049.8865 kb) | lagging | -0.047 | |
| 1189 (1051.4745 kb) | 1770 (1726.633 kb) | lagging | -0.056 | |
| 1771 (1729.998 kb) | 1865 (1900.517 kb) | lagging | -0.015 | |
| AT-skew forward | 1 (0 kb) | 123 (165.934 kb) | leading | -0.114 |
| 124 (167.869 kb) | 570 (748.3465 kb) | leading | -0.141 | |
| 571 (750.754 kb) | 618 (788.7415 kb) | leading | -0.012 | |
| 619 (791.234 kb) | 906 (1900.517 kb) | NA | -0.124 | |
| AT-skew reverse | 907 (0 kb) | 1120 (983.6125 kb) | NA | 0.138 |
| 1121 (983.9375 kb) | 1865 (1900.517 kb) | lagging | 0.073 |