Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.
Genome size (bp): 4133097
Number of genes 3960
Oriloc predictions: Origin 426 kb Terminus 2532 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3042.122 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 205.64 kb
Consensus predictions: Origin 426 kb Terminus 2532 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1292 | 0 | 2529 |
| GC-skew reverse | 2168 | 0 | 443 |
| 3110 | 0 | 2498 | |
| AT-skew forward | 202 | 0 | 429 |
| 1342 | 0.01 | 2653 | |
| AT-skew reverse | 2217 | 0.04 | 515 |
| 3108 | 0.00667 | 2494 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1292 (2529.004 kb) | NA | 0.046 |
| 1293 (2530.6275 kb) | 1949 (4132.819 kb) | lagging | -0.052 | |
| GC-skew reverse | 1950 (0 kb) | 2168 (442.623 kb) | lagging | -0.027 |
| 2169 (444.6 kb) | 3110 (2497.807 kb) | leading | 0.07 | |
| 3111 (2499.7815 kb) | 3960 (4132.819 kb) | lagging | -0.055 | |
| AT-skew forward | 1 (0 kb) | 202 (429.459 kb) | lagging | -0.157 |
| 203 (430.718 kb) | 1342 (2652.509 kb) | leading | -0.239 | |
| 1343 (2652.612 kb) | 1949 (4132.819 kb) | lagging | -0.168 | |
| AT-skew reverse | 1950 (0 kb) | 2217 (514.6925 kb) | NA | 0.228 |
| 2218 (516.029 kb) | 3108 (2494.388 kb) | leading | 0.147 | |
| 3109 (2495.665 kb) | 3960 (4132.819 kb) | lagging | 0.246 |
More G than C on the leading strand for replication - for reverse encoded genes.