Lagomorpha Phylogeny
Lagomorpha Phylogeny
ARC = ARTIODACTYLA + CETACEA CAR = CARNIVORA CHI = CHIROPTERA DER = DERMOPTERA EDE = EDENTATA HYR = HYRACOIDEA HYS = HYSTRICOGNATHI INS = INSECTIVORA LAG = LAGOMORPHA MAC = MACROSCELIDEA PER = PERISSODACTYLA PHO = PHOLIDOTA PRI = PRIMATES PRO = PROBOSCIDEA SCA = SCANDENTIA SCI = SCIUROGNATHI SIR = SIRENIA TUB = TUBULIDENTATA OUT = outgroup 1 = presence of data 0 = absence of data Id ARC CAR CHI DER EDE HYR HYS INS LAG MAC PER PHO PRI PRO SCI SCA SIR TUB OUT Gene Definition GD0001 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 transferrin GD0005 1 1 0 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 1 insulin GD0007 1 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 chorionic gonadotropin (HCG) beta GD0008 1 1 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 prolactin GD0014 1 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 phospholipase A-2 GD0021 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 rhodopsin GD0024 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 bone Gla protein (BGP, osteocalcin) GD0026 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 sarcoplasmic reticulum 2+-Ca-ATPase GD0029 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 H,K-ATPase beta subunit GD0044 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 GTP-binding protein (rab2) GD0046 1 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 serum albumin GD0058 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 alpha-A-crystallin GD0060 1 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 Cu-Zn superoxide dismutase (SOD) GD0066 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 basic fibroblast growth factor (bFGF) 22.5 GD0068 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 glucagon GD0069 1 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 gastrin . GD0071 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 GLUT1 glucose transporter GD0083 1 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 pre-alpha-lactalbumin mrna. GD0089 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 SPARC protein GD0093 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 protein phosphatase-1 catalytic beta-subunit (PPP1CB) GD0097 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 Ldh-B lactate dehydrogenase-B GD0098 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 Ldh-A lactate dehydrogenase-A GD0099 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 prolactin receptor GD0100 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 growth hormone receptor GD0111 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 cytosolic aspartate aminotransferase GD0113 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 cytochrome b5 GD0128 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 IAPP islet amyloid polypeptide GD0132 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 lipophilin = myelin proteolipid protein (PLP) GD0134 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 actin-beta GD0135 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 alpha smooth muscle actin GD0141 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 CKII beta casein kinase II beta GD0143 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 interleukin 8 GD0144 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 ferritin H subunit GD0147 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 ciliary neurotrophic factor (CNTF) = GPA GD0148 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 histone H3.3 GD0152 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 pyruvate kinase. GD0153 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 retinol-binding protein GD0154 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 Rag-1 recombination activation gene GD0156 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 thioredoxin protein GD0158 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 elongation factor 1 alpha. GD0161 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 muscle creatine kinase GD0162 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 brain creatine kinase GD0167 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 transthyretin (prealbumin) GD0168 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 T-cell membrane glycoprotein CD28 GD0171 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 complement component 3 (C3) GD0175 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 iron-responsive element-binding protein GD0177 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 fast fiber troponin I GD0178 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 21 kd polypeptide under translational control GD0188 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 renal Na/Pi-cotransporter GD0200 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 prothrombin. GD0207 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 apolipoprotein A-I (ApoA-I) GD0214 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 glyceraldehyde-3-phosphate dehydrogenase GD0215 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 acetylcholinesterase (ACHE) GD0224 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 androgen receptor GD0225 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 glucocorticoid receptor GD0228 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 very low density lipoprotein receptor VLDLR GD0233 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 casein kinase II alpha GD0235 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 MAP kinase kinase (MEK) GD0241 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 cardiac troponin T GD0246 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 bone proteoglycan II, decorin GD0248 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 annexin I = calpactin II = lipocortin I GD0254 1 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 B(2)-microglobulin GD0262 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 alkali myosin light chain 1 GD0263 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 fast skeletal troponin C GD0266 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 alpha-2 macroglobulin receptor GD0271 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 carbonic anhydrase II (CAII) GD0276 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 inward rectifier K+ channel protein (hirk1) GD0278 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 phospholamban GD0281 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 cytochrome P450 cholesterol side-chain cleavage enzyme SCC GD0286 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 cytosolic adenylate kinase (AK1) GD0288 1 1 1 0 0 0 1 1 1 0 1 0 1 1 1 1 0 1 1 myoglobin GD0298 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 sodium-hydrogen exchange protein-isoform 3 (NHE-3) GD0299 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 parvalbumin GD0303 1 1 1 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 cytochrome c GD0306 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 cardiac muscle troponin I GD0319 1 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 1 acylphosphatase GD0320 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 0 1 beta globin GD0321 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 0 1 alpha-globin GD0329 1 1 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 mitochondrion cytochrome b GD0331 1 1 1 1 1 0 0 0 1 0 1 0 1 0 1 1 0 0 1 mitochondrion cytochrome c oxydase subunit II COX-2 GD0334 1 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 mitochondrial protein A6L / ATPase subunit 8 GD0353 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 angiotensin_II_type_1_receptor GD0355 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 apolipoprotein_b GD0356 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 arylanine_n-acetyl GD0364 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 calsequestrin GD0367 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 fibronectin GD0370 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 heat_shock_prot_90beta GD0371 1 0 1 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 hemoglobin_epsilon GD0373 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 irbp GD0377 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 oxytocin_neurophysin_I_precur GD0380 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 protein-disulfide_isomerase
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