Useful links.

Search for sequence similarities in databases :

Exercise 2: sequence similarity search (1)

Exercise 7: sequence similarity search (2)

Gene prediction:

Exercise 4: gene prediction

Molecular phylogeny:

Exercise 5: molecular phylogeny

Sequence alignments:

Exercise 3: protein sequence alignment

Exercise 8: genomic sequence alignment

Identification of conserved regulatory regions:

Exercise 8b: prediction of regulatory elements

Analysis of selective pressure in proteins (Ka/Ks):

Exercise: PAML

Detecting selection by the analysis of polymorphism:

Exercise 9: polymorphism and substitution